| COHORT | SUBGROUP | GENDER | Subgroup | sampleID | |
|---|---|---|---|---|---|
| ICGC_MB1 | DKFZ_WGS | SHH | F | SHH | ICGC_MB1 |
| ICGC_MB101 | DKFZ_WGS | SHH | F | SHH | ICGC_MB101 |
| ICGC_MB102 | DKFZ_WGS | SHH | T | SHH | ICGC_MB102 |
| ICGC_MB104 | DKFZ_WGS | SHH | M | SHH | ICGC_MB104 |
| ICGC_MB106 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB106 |
| ICGC_MB107 | DKFZ_WGS | WNT | M | WNT | ICGC_MB107 |
| ICGC_MB108 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB108 |
| ICGC_MB110 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB110 |
| ICGC_MB111 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB111 |
| ICGC_MB112 | DKFZ_WGS | WNT | M | WNT | ICGC_MB112 |
| ICGC_MB113 | DKFZ_WGS | WNT | F | WNT | ICGC_MB113 |
| ICGC_MB114 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB114 |
| ICGC_MB115 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB115 |
| ICGC_MB117 | DKFZ_WGS | WNT | F | WNT | ICGC_MB117 |
| ICGC_MB118 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB118 |
| ICGC_MB119 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB119 |
| ICGC_MB12 | DKFZ_WGS | SHH | M | SHH | ICGC_MB12 |
| ICGC_MB121 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB121 |
| ICGC_MB122 | DKFZ_WGS | WNT | M | WNT | ICGC_MB122 |
| ICGC_MB124 | DKFZ_WGS | WNT | F | WNT | ICGC_MB124 |
| ICGC_MB128 | DKFZ_WGS | WNT | M | WNT | ICGC_MB128 |
| ICGC_MB129 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB129 |
| ICGC_MB130 | DKFZ_WGS | WNT | F | WNT | ICGC_MB130 |
| ICGC_MB131 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB131 |
| ICGC_MB132 | DKFZ_WGS | SHH | F | SHH | ICGC_MB132 |
| ICGC_MB134 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB134 |
| ICGC_MB136 | DKFZ_WGS | SHH | M | SHH | ICGC_MB136 |
| ICGC_MB137 | DKFZ_WGS | SHH | M | SHH | ICGC_MB137 |
| ICGC_MB139 | DKFZ_WGS | Group3 | K | G3 | ICGC_MB139 |
| ICGC_MB140 | DKFZ_WGS | WNT | M | WNT | ICGC_MB140 |
| ICGC_MB141 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB141 |
| ICGC_MB146 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB146 |
| ICGC_MB148 | DKFZ_WGS | WNT | F | WNT | ICGC_MB148 |
| ICGC_MB15 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB15 |
| ICGC_MB16 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB16 |
| ICGC_MB164 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB164 |
| ICGC_MB165 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB165 |
| ICGC_MB166 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB166 |
| ICGC_MB168 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB168 |
| ICGC_MB170 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB170 |
| ICGC_MB174 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB174 |
| ICGC_MB175 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB175 |
| ICGC_MB176 | DKFZ_WGS | WNT | F | WNT | ICGC_MB176 |
| ICGC_MB177 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB177 |
| ICGC_MB178 | DKFZ_WGS | SHH | M | SHH | ICGC_MB178 |
| ICGC_MB179 | DKFZ_WGS | SHH | F | SHH | ICGC_MB179 |
| ICGC_MB18 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB18 |
| ICGC_MB180 | DKFZ_WGS | SHH | M | SHH | ICGC_MB180 |
| ICGC_MB181 | DKFZ_WGS | SHH | F | SHH | ICGC_MB181 |
| ICGC_MB183 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB183 |
| ICGC_MB184 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB184 |
| ICGC_MB185 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB185 |
| ICGC_MB188 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB188 |
| ICGC_MB19 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB19 |
| ICGC_MB193 | DKFZ_WGS | SHH | F | SHH | ICGC_MB193 |
| ICGC_MB194 | DKFZ_WGS | SHH | M | SHH | ICGC_MB194 |
| ICGC_MB198 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB198 |
| ICGC_MB199 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB199 |
| ICGC_MB2 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB2 |
| ICGC_MB20 | DKFZ_WGS | WNT | F | WNT | ICGC_MB20 |
| ICGC_MB204 | DKFZ_WGS | SHH | F | SHH | ICGC_MB204 |
| ICGC_MB205 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB205 |
| ICGC_MB206 | DKFZ_WGS | SHH | F | SHH | ICGC_MB206 |
| ICGC_MB21 | DKFZ_WGS | SHH | F | SHH | ICGC_MB21 |
| ICGC_MB213 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB213 |
| ICGC_MB224 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB224 |
| ICGC_MB226 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB226 |
| ICGC_MB227 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB227 |
| ICGC_MB228 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB228 |
| ICGC_MB23 | DKFZ_WGS | WNT | F | WNT | ICGC_MB23 |
| ICGC_MB230 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB230 |
| ICGC_MB232 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB232 |
| ICGC_MB233 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB233 |
| ICGC_MB234 | DKFZ_WGS | SHH | F | SHH | ICGC_MB234 |
| ICGC_MB235 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB235 |
| ICGC_MB236 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB236 |
| ICGC_MB237 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB237 |
| ICGC_MB239 | DKFZ_WGS | SHH | M | SHH | ICGC_MB239 |
| ICGC_MB24 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB24 |
| ICGC_MB241 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB241 |
| ICGC_MB243 | DKFZ_WGS | SHH | M | SHH | ICGC_MB243 |
| ICGC_MB244 | DKFZ_WGS | SHH | M | SHH | ICGC_MB244 |
| ICGC_MB246 | DKFZ_WGS | SHH | M | SHH | ICGC_MB246 |
| ICGC_MB247 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB247 |
| ICGC_MB248 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB248 |
| ICGC_MB250 | DKFZ_WGS | SHH | M | SHH | ICGC_MB250 |
| ICGC_MB26 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB26 |
| ICGC_MB260 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB260 |
| ICGC_MB262 | DKFZ_WGS | SHH | M | SHH | ICGC_MB262 |
| ICGC_MB264 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB264 |
| ICGC_MB265 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB265 |
| ICGC_MB266 | DKFZ_WGS | SHH | M | SHH | ICGC_MB266 |
| ICGC_MB268 | DKFZ_WGS | SHH | F | SHH | ICGC_MB268 |
| ICGC_MB269 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB269 |
| ICGC_MB270 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB270 |
| ICGC_MB271 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB271 |
| ICGC_MB274 | DKFZ_WGS | SHH | M | SHH | ICGC_MB274 |
| ICGC_MB275 | DKFZ_WGS | SHH | M | SHH | ICGC_MB275 |
| ICGC_MB276 | DKFZ_WGS | WNT | F | WNT | ICGC_MB276 |
| ICGC_MB277 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB277 |
| ICGC_MB278 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB278 |
| ICGC_MB28 | DKFZ_WGS | SHH | M | SHH | ICGC_MB28 |
| ICGC_MB280 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB280 |
| ICGC_MB281 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB281 |
| ICGC_MB284 | DKFZ_WGS | SHH | M | SHH | ICGC_MB284 |
| ICGC_MB286 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB286 |
| ICGC_MB287 | DKFZ_WGS | SHH | F | SHH | ICGC_MB287 |
| ICGC_MB288 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB288 |
| ICGC_MB289 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB289 |
| ICGC_MB290 | DKFZ_WGS | WNT | M | WNT | ICGC_MB290 |
| ICGC_MB291 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB291 |
| ICGC_MB292 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB292 |
| ICGC_MB293 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB293 |
| ICGC_MB294 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB294 |
| ICGC_MB296 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB296 |
| ICGC_MB297 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB297 |
| ICGC_MB299 | DKFZ_WGS | SHH | M | SHH | ICGC_MB299 |
| ICGC_MB3 | DKFZ_WGS | SHH | F | SHH | ICGC_MB3 |
| ICGC_MB302 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB302 |
| ICGC_MB303 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB303 |
| ICGC_MB304 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB304 |
| ICGC_MB31 | DKFZ_WGS | WNT | F | WNT | ICGC_MB31 |
| ICGC_MB32 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB32 |
| ICGC_MB34 | DKFZ_WGS | SHH | F | SHH | ICGC_MB34 |
| ICGC_MB35 | DKFZ_WGS | SHH | F | SHH | ICGC_MB35 |
| ICGC_MB36 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB36 |
| ICGC_MB37 | DKFZ_WGS | SHH | F | SHH | ICGC_MB37 |
| ICGC_MB38 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB38 |
| ICGC_MB39 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB39 |
| ICGC_MB40 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB40 |
| ICGC_MB45 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB45 |
| ICGC_MB46 | DKFZ_WGS | WNT | F | WNT | ICGC_MB46 |
| ICGC_MB49 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB49 |
| ICGC_MB5 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB5 |
| ICGC_MB50 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB50 |
| ICGC_MB51 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB51 |
| ICGC_MB53 | DKFZ_WGS | SHH | M | SHH | ICGC_MB53 |
| ICGC_MB54 | DKFZ_WGS | WNT | F | WNT | ICGC_MB54 |
| ICGC_MB56 | DKFZ_WGS | SHH | F | SHH | ICGC_MB56 |
| ICGC_MB57 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB57 |
| ICGC_MB58 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB58 |
| ICGC_MB59 | DKFZ_WGS | SHH | F | SHH | ICGC_MB59 |
| ICGC_MB6 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB6 |
| ICGC_MB60 | DKFZ_WGS | SHH | M | SHH | ICGC_MB60 |
| ICGC_MB61 | DKFZ_WGS | SHH | M | SHH | ICGC_MB61 |
| ICGC_MB62 | DKFZ_WGS | SHH | M | SHH | ICGC_MB62 |
| ICGC_MB63 | DKFZ_WGS | SHH | M | SHH | ICGC_MB63 |
| ICGC_MB64 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB64 |
| ICGC_MB65 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB65 |
| ICGC_MB68 | DKFZ_WGS | SHH | F | SHH | ICGC_MB68 |
| ICGC_MB7 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB7 |
| ICGC_MB70 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB70 |
| ICGC_MB71 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB71 |
| ICGC_MB8 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB8 |
| ICGC_MB83 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB83 |
| ICGC_MB84 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB84 |
| ICGC_MB85 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB85 |
| ICGC_MB86 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB86 |
| ICGC_MB88 | DKFZ_WGS | SHH | M | SHH | ICGC_MB88 |
| ICGC_MB89 | DKFZ_WGS | Group3 | F | G3 | ICGC_MB89 |
| ICGC_MB9 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB9 |
| ICGC_MB90 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB90 |
| ICGC_MB91 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB91 |
| ICGC_MB92 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB92 |
| ICGC_MB94 | DKFZ_WGS | Group4 | F | G4 | ICGC_MB94 |
| ICGC_MB95 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB95 |
| ICGC_MB96 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB96 |
| ICGC_MB98 | DKFZ_WGS | Group3 | M | G3 | ICGC_MB98 |
| ICGC_MB99 | DKFZ_WGS | Group4 | M | G4 | ICGC_MB99 |
This eSet contains 9599 probes/transcripts/genes in 169 samples, in which 3 sample class: SUBGROUP, GENDER, Subgroup will used for basic clustering analysis.
Distance between samples is calculated by dist2().
## Warning: Values in column annotation 'SUBGROUP' have a different order of names from the matrix column names. It may lead
## to wrong conclusion of your data. Please double check.
## Warning: Values in column annotation 'GENDER' have a different order of names from the matrix column names. It may lead to
## wrong conclusion of your data. Please double check.
## Warning: Values in column annotation 'Subgroup' have a different order of names from the matrix column names. It may lead
## to wrong conclusion of your data. Please double check.
Original expression matrix is transformed and first two components/dimensions are visualized.
The boxplot for the expression value in each sample is displayed with colored grouped by the sample class.
The density for the expression value in each sample is displayed with colored grouped by the sample class.
## Too many samples for drawing the correlation plot, will select the first 30 samples !
## If want to specify the sample list, please choose the subset of eset as input !
## Too many samples for drawing the correlation plot, will select the first 30 samples !
## If want to specify the sample list, please choose the subset of eset as input !
## Too many samples for drawing the correlation plot, will select the first 30 samples !
## If want to specify the sample list, please choose the subset of eset as input !
## No selection for MeanSd plot!