COHORT SUBGROUP GENDER Subgroup sampleID
ICGC_MB1 DKFZ_WGS SHH F SHH ICGC_MB1
ICGC_MB101 DKFZ_WGS SHH F SHH ICGC_MB101
ICGC_MB102 DKFZ_WGS SHH T SHH ICGC_MB102
ICGC_MB104 DKFZ_WGS SHH M SHH ICGC_MB104
ICGC_MB106 DKFZ_WGS Group3 M G3 ICGC_MB106
ICGC_MB107 DKFZ_WGS WNT M WNT ICGC_MB107
ICGC_MB108 DKFZ_WGS Group4 M G4 ICGC_MB108
ICGC_MB110 DKFZ_WGS Group4 F G4 ICGC_MB110
ICGC_MB111 DKFZ_WGS Group3 F G3 ICGC_MB111
ICGC_MB112 DKFZ_WGS WNT M WNT ICGC_MB112
ICGC_MB113 DKFZ_WGS WNT F WNT ICGC_MB113
ICGC_MB114 DKFZ_WGS Group4 M G4 ICGC_MB114
ICGC_MB115 DKFZ_WGS Group4 M G4 ICGC_MB115
ICGC_MB117 DKFZ_WGS WNT F WNT ICGC_MB117
ICGC_MB118 DKFZ_WGS Group4 M G4 ICGC_MB118
ICGC_MB119 DKFZ_WGS Group4 F G4 ICGC_MB119
ICGC_MB12 DKFZ_WGS SHH M SHH ICGC_MB12
ICGC_MB121 DKFZ_WGS Group4 M G4 ICGC_MB121
ICGC_MB122 DKFZ_WGS WNT M WNT ICGC_MB122
ICGC_MB124 DKFZ_WGS WNT F WNT ICGC_MB124
ICGC_MB128 DKFZ_WGS WNT M WNT ICGC_MB128
ICGC_MB129 DKFZ_WGS Group4 M G4 ICGC_MB129
ICGC_MB130 DKFZ_WGS WNT F WNT ICGC_MB130
ICGC_MB131 DKFZ_WGS Group3 M G3 ICGC_MB131
ICGC_MB132 DKFZ_WGS SHH F SHH ICGC_MB132
ICGC_MB134 DKFZ_WGS Group3 F G3 ICGC_MB134
ICGC_MB136 DKFZ_WGS SHH M SHH ICGC_MB136
ICGC_MB137 DKFZ_WGS SHH M SHH ICGC_MB137
ICGC_MB139 DKFZ_WGS Group3 K G3 ICGC_MB139
ICGC_MB140 DKFZ_WGS WNT M WNT ICGC_MB140
ICGC_MB141 DKFZ_WGS Group3 F G3 ICGC_MB141
ICGC_MB146 DKFZ_WGS Group3 F G3 ICGC_MB146
ICGC_MB148 DKFZ_WGS WNT F WNT ICGC_MB148
ICGC_MB15 DKFZ_WGS Group4 M G4 ICGC_MB15
ICGC_MB16 DKFZ_WGS Group3 M G3 ICGC_MB16
ICGC_MB164 DKFZ_WGS Group3 M G3 ICGC_MB164
ICGC_MB165 DKFZ_WGS Group3 M G3 ICGC_MB165
ICGC_MB166 DKFZ_WGS Group3 M G3 ICGC_MB166
ICGC_MB168 DKFZ_WGS Group3 M G3 ICGC_MB168
ICGC_MB170 DKFZ_WGS Group3 M G3 ICGC_MB170
ICGC_MB174 DKFZ_WGS Group4 M G4 ICGC_MB174
ICGC_MB175 DKFZ_WGS Group4 M G4 ICGC_MB175
ICGC_MB176 DKFZ_WGS WNT F WNT ICGC_MB176
ICGC_MB177 DKFZ_WGS Group4 F G4 ICGC_MB177
ICGC_MB178 DKFZ_WGS SHH M SHH ICGC_MB178
ICGC_MB179 DKFZ_WGS SHH F SHH ICGC_MB179
ICGC_MB18 DKFZ_WGS Group3 F G3 ICGC_MB18
ICGC_MB180 DKFZ_WGS SHH M SHH ICGC_MB180
ICGC_MB181 DKFZ_WGS SHH F SHH ICGC_MB181
ICGC_MB183 DKFZ_WGS Group4 M G4 ICGC_MB183
ICGC_MB184 DKFZ_WGS Group4 M G4 ICGC_MB184
ICGC_MB185 DKFZ_WGS Group4 M G4 ICGC_MB185
ICGC_MB188 DKFZ_WGS Group3 F G3 ICGC_MB188
ICGC_MB19 DKFZ_WGS Group4 F G4 ICGC_MB19
ICGC_MB193 DKFZ_WGS SHH F SHH ICGC_MB193
ICGC_MB194 DKFZ_WGS SHH M SHH ICGC_MB194
ICGC_MB198 DKFZ_WGS Group3 M G3 ICGC_MB198
ICGC_MB199 DKFZ_WGS Group4 M G4 ICGC_MB199
ICGC_MB2 DKFZ_WGS Group4 M G4 ICGC_MB2
ICGC_MB20 DKFZ_WGS WNT F WNT ICGC_MB20
ICGC_MB204 DKFZ_WGS SHH F SHH ICGC_MB204
ICGC_MB205 DKFZ_WGS Group3 F G3 ICGC_MB205
ICGC_MB206 DKFZ_WGS SHH F SHH ICGC_MB206
ICGC_MB21 DKFZ_WGS SHH F SHH ICGC_MB21
ICGC_MB213 DKFZ_WGS Group4 M G4 ICGC_MB213
ICGC_MB224 DKFZ_WGS Group4 M G4 ICGC_MB224
ICGC_MB226 DKFZ_WGS Group3 M G3 ICGC_MB226
ICGC_MB227 DKFZ_WGS Group4 M G4 ICGC_MB227
ICGC_MB228 DKFZ_WGS Group4 F G4 ICGC_MB228
ICGC_MB23 DKFZ_WGS WNT F WNT ICGC_MB23
ICGC_MB230 DKFZ_WGS Group4 F G4 ICGC_MB230
ICGC_MB232 DKFZ_WGS Group4 M G4 ICGC_MB232
ICGC_MB233 DKFZ_WGS Group4 F G4 ICGC_MB233
ICGC_MB234 DKFZ_WGS SHH F SHH ICGC_MB234
ICGC_MB235 DKFZ_WGS Group3 F G3 ICGC_MB235
ICGC_MB236 DKFZ_WGS Group4 M G4 ICGC_MB236
ICGC_MB237 DKFZ_WGS Group4 F G4 ICGC_MB237
ICGC_MB239 DKFZ_WGS SHH M SHH ICGC_MB239
ICGC_MB24 DKFZ_WGS Group4 M G4 ICGC_MB24
ICGC_MB241 DKFZ_WGS Group4 M G4 ICGC_MB241
ICGC_MB243 DKFZ_WGS SHH M SHH ICGC_MB243
ICGC_MB244 DKFZ_WGS SHH M SHH ICGC_MB244
ICGC_MB246 DKFZ_WGS SHH M SHH ICGC_MB246
ICGC_MB247 DKFZ_WGS Group3 F G3 ICGC_MB247
ICGC_MB248 DKFZ_WGS Group3 F G3 ICGC_MB248
ICGC_MB250 DKFZ_WGS SHH M SHH ICGC_MB250
ICGC_MB26 DKFZ_WGS Group4 M G4 ICGC_MB26
ICGC_MB260 DKFZ_WGS Group3 M G3 ICGC_MB260
ICGC_MB262 DKFZ_WGS SHH M SHH ICGC_MB262
ICGC_MB264 DKFZ_WGS Group4 F G4 ICGC_MB264
ICGC_MB265 DKFZ_WGS Group4 M G4 ICGC_MB265
ICGC_MB266 DKFZ_WGS SHH M SHH ICGC_MB266
ICGC_MB268 DKFZ_WGS SHH F SHH ICGC_MB268
ICGC_MB269 DKFZ_WGS Group4 F G4 ICGC_MB269
ICGC_MB270 DKFZ_WGS Group4 M G4 ICGC_MB270
ICGC_MB271 DKFZ_WGS Group3 M G3 ICGC_MB271
ICGC_MB274 DKFZ_WGS SHH M SHH ICGC_MB274
ICGC_MB275 DKFZ_WGS SHH M SHH ICGC_MB275
ICGC_MB276 DKFZ_WGS WNT F WNT ICGC_MB276
ICGC_MB277 DKFZ_WGS Group3 F G3 ICGC_MB277
ICGC_MB278 DKFZ_WGS Group3 F G3 ICGC_MB278
ICGC_MB28 DKFZ_WGS SHH M SHH ICGC_MB28
ICGC_MB280 DKFZ_WGS Group4 F G4 ICGC_MB280
ICGC_MB281 DKFZ_WGS Group4 F G4 ICGC_MB281
ICGC_MB284 DKFZ_WGS SHH M SHH ICGC_MB284
ICGC_MB286 DKFZ_WGS Group4 F G4 ICGC_MB286
ICGC_MB287 DKFZ_WGS SHH F SHH ICGC_MB287
ICGC_MB288 DKFZ_WGS Group4 M G4 ICGC_MB288
ICGC_MB289 DKFZ_WGS Group3 M G3 ICGC_MB289
ICGC_MB290 DKFZ_WGS WNT M WNT ICGC_MB290
ICGC_MB291 DKFZ_WGS Group3 M G3 ICGC_MB291
ICGC_MB292 DKFZ_WGS Group3 M G3 ICGC_MB292
ICGC_MB293 DKFZ_WGS Group4 M G4 ICGC_MB293
ICGC_MB294 DKFZ_WGS Group4 F G4 ICGC_MB294
ICGC_MB296 DKFZ_WGS Group3 M G3 ICGC_MB296
ICGC_MB297 DKFZ_WGS Group4 M G4 ICGC_MB297
ICGC_MB299 DKFZ_WGS SHH M SHH ICGC_MB299
ICGC_MB3 DKFZ_WGS SHH F SHH ICGC_MB3
ICGC_MB302 DKFZ_WGS Group4 M G4 ICGC_MB302
ICGC_MB303 DKFZ_WGS Group4 M G4 ICGC_MB303
ICGC_MB304 DKFZ_WGS Group3 M G3 ICGC_MB304
ICGC_MB31 DKFZ_WGS WNT F WNT ICGC_MB31
ICGC_MB32 DKFZ_WGS Group4 F G4 ICGC_MB32
ICGC_MB34 DKFZ_WGS SHH F SHH ICGC_MB34
ICGC_MB35 DKFZ_WGS SHH F SHH ICGC_MB35
ICGC_MB36 DKFZ_WGS Group3 M G3 ICGC_MB36
ICGC_MB37 DKFZ_WGS SHH F SHH ICGC_MB37
ICGC_MB38 DKFZ_WGS Group4 M G4 ICGC_MB38
ICGC_MB39 DKFZ_WGS Group3 M G3 ICGC_MB39
ICGC_MB40 DKFZ_WGS Group4 M G4 ICGC_MB40
ICGC_MB45 DKFZ_WGS Group3 M G3 ICGC_MB45
ICGC_MB46 DKFZ_WGS WNT F WNT ICGC_MB46
ICGC_MB49 DKFZ_WGS Group4 M G4 ICGC_MB49
ICGC_MB5 DKFZ_WGS Group3 F G3 ICGC_MB5
ICGC_MB50 DKFZ_WGS Group3 F G3 ICGC_MB50
ICGC_MB51 DKFZ_WGS Group4 M G4 ICGC_MB51
ICGC_MB53 DKFZ_WGS SHH M SHH ICGC_MB53
ICGC_MB54 DKFZ_WGS WNT F WNT ICGC_MB54
ICGC_MB56 DKFZ_WGS SHH F SHH ICGC_MB56
ICGC_MB57 DKFZ_WGS Group4 F G4 ICGC_MB57
ICGC_MB58 DKFZ_WGS Group4 M G4 ICGC_MB58
ICGC_MB59 DKFZ_WGS SHH F SHH ICGC_MB59
ICGC_MB6 DKFZ_WGS Group4 F G4 ICGC_MB6
ICGC_MB60 DKFZ_WGS SHH M SHH ICGC_MB60
ICGC_MB61 DKFZ_WGS SHH M SHH ICGC_MB61
ICGC_MB62 DKFZ_WGS SHH M SHH ICGC_MB62
ICGC_MB63 DKFZ_WGS SHH M SHH ICGC_MB63
ICGC_MB64 DKFZ_WGS Group4 M G4 ICGC_MB64
ICGC_MB65 DKFZ_WGS Group4 M G4 ICGC_MB65
ICGC_MB68 DKFZ_WGS SHH F SHH ICGC_MB68
ICGC_MB7 DKFZ_WGS Group4 M G4 ICGC_MB7
ICGC_MB70 DKFZ_WGS Group4 M G4 ICGC_MB70
ICGC_MB71 DKFZ_WGS Group4 M G4 ICGC_MB71
ICGC_MB8 DKFZ_WGS Group4 F G4 ICGC_MB8
ICGC_MB83 DKFZ_WGS Group4 F G4 ICGC_MB83
ICGC_MB84 DKFZ_WGS Group4 M G4 ICGC_MB84
ICGC_MB85 DKFZ_WGS Group4 F G4 ICGC_MB85
ICGC_MB86 DKFZ_WGS Group4 M G4 ICGC_MB86
ICGC_MB88 DKFZ_WGS SHH M SHH ICGC_MB88
ICGC_MB89 DKFZ_WGS Group3 F G3 ICGC_MB89
ICGC_MB9 DKFZ_WGS Group3 M G3 ICGC_MB9
ICGC_MB90 DKFZ_WGS Group3 M G3 ICGC_MB90
ICGC_MB91 DKFZ_WGS Group4 M G4 ICGC_MB91
ICGC_MB92 DKFZ_WGS Group4 M G4 ICGC_MB92
ICGC_MB94 DKFZ_WGS Group4 F G4 ICGC_MB94
ICGC_MB95 DKFZ_WGS Group3 M G3 ICGC_MB95
ICGC_MB96 DKFZ_WGS Group3 M G3 ICGC_MB96
ICGC_MB98 DKFZ_WGS Group3 M G3 ICGC_MB98
ICGC_MB99 DKFZ_WGS Group4 M G4 ICGC_MB99

This eSet contains 9599 probes/transcripts/genes in 169 samples, in which 3 sample class: SUBGROUP, GENDER, Subgroup will used for basic clustering analysis.

Part I: Heatmap between samples

Distance between samples is calculated by dist2().

## Warning: Values in column annotation 'SUBGROUP' have a different order of names from the matrix column names. It may lead
## to wrong conclusion of your data. Please double check.
## Warning: Values in column annotation 'GENDER' have a different order of names from the matrix column names. It may lead to
## wrong conclusion of your data. Please double check.
## Warning: Values in column annotation 'Subgroup' have a different order of names from the matrix column names. It may lead
## to wrong conclusion of your data. Please double check.

Part II: Dimension Reduction plot for samples

Original expression matrix is transformed and first two components/dimensions are visualized.

Part III: Boxplot

The boxplot for the expression value in each sample is displayed with colored grouped by the sample class.

Part IV: Density plot

The density for the expression value in each sample is displayed with colored grouped by the sample class.

Part V: Correlation plot (pearson)

## Too many samples for drawing the correlation plot, will select the first 30 samples !
##             If want to specify the sample list, please choose the subset of eset as input !
## Too many samples for drawing the correlation plot, will select the first 30 samples !
##             If want to specify the sample list, please choose the subset of eset as input !

## Too many samples for drawing the correlation plot, will select the first 30 samples !
##             If want to specify the sample list, please choose the subset of eset as input !

Part VI: MeanSd Plot

## No selection for MeanSd plot!